PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0307.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 150aa    MW: 15919 Da    PI: 8.8322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0307.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-193165135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR+gp g+k+LCnaCG++ rkk++
  Kaladp0039s0307.1.p 31 CVDCGTSKTPLWRSGPAGPKSLCNACGIKSRKKRR 65
                         ********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-122566No hitNo description
SMARTSM004011.5E-122577IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4262561IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-162966IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.21E-133065No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003202.5E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVYLSDKGSG SGDMRMRRCT SESESQLKKT CVDCGTSKTP LWRSGPAGPK SLCNACGIKS  60
RKKRRPSGSL IKENKKPKNE SAVSSKSSDK DGSDKDEISD MVNRIKMVLN GQTPAGASND  120
EADSSGCDFG EEERAAILLM ALSYGILSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FJ104e-26GAT16_ARATH; GATA transcription factor 16
STRINGVIT_05s0077g01450.t011e-28(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-25GATA transcription factor 16